J5_5VPP_001

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5VPP_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.1261

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5VPP|1|QA|C|36
5VPP|1|QA|U|37
5VPP|1|QA|G|38
5VPP|1|QA|G|39
*
5VPP|1|QA|C|403
5VPP|1|QA|U|404
5VPP|1|QA|U|405
5VPP|1|QA|G|406
*
5VPP|1|QA|C|436
5VPP|1|QA|U|437
5VPP|1|QA|G|438
5VPP|1|QA|A|440
5VPP|1|QA|A|441
5VPP|1|QA|C|442
*
5VPP|1|QA|G|492
5VPP|1|QA|G|493
5VPP|1|QA|U|494
5VPP|1|QA|A|495
5VPP|1|QA|A|497
5VPP|1|QA|U|498
5VPP|1|QA|A|499
5VPP|1|QA|G|500
*
5VPP|1|QA|C|545
5VPP|1|QA|G|546
5VPP|1|QA|A|547
5VPP|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9