J5_5VYC_001

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GUCGCUCGCUCCUCUCCCACUUG*CAUGCCGACGGGCGC*GCGUGCAUU*ACCUCGGGCCGAUCGCACGC*GCGGCGACGACC

Length

79 nucleotides

Bulged bases

5VYC|1|i1|U|128, 5VYC|1|i1|C|129, 5VYC|1|i1|G|130, 5VYC|1|i1|C|131, 5VYC|1|i1|U|132, 5VYC|1|i1|C|133, 5VYC|1|i1|C|134, 5VYC|1|i1|U|135, 5VYC|1|i1|C|136, 5VYC|1|i1|U|137, 5VYC|1|i1|C|138, 5VYC|1|i1|C|139, 5VYC|1|i1|C|140, 5VYC|1|i1|C|142, 5VYC|1|i1|U|143, 5VYC|1|i1|G|183, 5VYC|1|i1|U|305, 5VYC|1|i1|C|306, 5VYC|1|i1|G|307, 5VYC|1|i1|G|308, 5VYC|1|i1|C|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VYC|1|i1|G|123
5VYC|1|i1|U|124
5VYC|1|i1|C|125
5VYC|1|i1|G|126
5VYC|1|i1|C|127
5VYC|1|i1|U|128
5VYC|1|i1|C|129
5VYC|1|i1|G|130
5VYC|1|i1|C|131
5VYC|1|i1|U|132
5VYC|1|i1|C|133
5VYC|1|i1|C|134
5VYC|1|i1|U|135
5VYC|1|i1|C|136
5VYC|1|i1|U|137
5VYC|1|i1|C|138
5VYC|1|i1|C|139
5VYC|1|i1|C|140
5VYC|1|i1|A|141
5VYC|1|i1|C|142
5VYC|1|i1|U|143
5VYC|1|i1|U|144
5VYC|1|i1|G|145
*
5VYC|1|i1|C|174
5VYC|1|i1|A|175
5VYC|1|i1|U|176
5VYC|1|i1|G|177
5VYC|1|i1|C|178
5VYC|1|i1|C|179
5VYC|1|i1|G|180
5VYC|1|i1|A|181
5VYC|1|i1|C|182
5VYC|1|i1|G|183
5VYC|1|i1|G|184
5VYC|1|i1|G|185
5VYC|1|i1|C|186
5VYC|1|i1|G|187
5VYC|1|i1|C|188
*
5VYC|1|i1|G|211
5VYC|1|i1|C|212
5VYC|1|i1|G|213
5VYC|1|i1|U|214
5VYC|1|i1|G|215
5VYC|1|i1|C|216
5VYC|1|i1|A|217
5VYC|1|i1|U|218
5VYC|1|i1|U|219
*
5VYC|1|i1|A|302
5VYC|1|i1|C|303
5VYC|1|i1|C|304
5VYC|1|i1|U|305
5VYC|1|i1|C|306
5VYC|1|i1|G|307
5VYC|1|i1|G|308
5VYC|1|i1|G|309
5VYC|1|i1|C|310
5VYC|1|i1|C|311
5VYC|1|i1|G|312
5VYC|1|i1|A|313
5VYC|1|i1|U|314
5VYC|1|i1|C|315
5VYC|1|i1|G|316
5VYC|1|i1|C|317
5VYC|1|i1|A|318
5VYC|1|i1|C|319
5VYC|1|i1|G|320
5VYC|1|i1|C|321
*
5VYC|1|i1|G|330
5VYC|1|i1|C|331
5VYC|1|i1|G|332
5VYC|1|i1|G|333
5VYC|1|i1|C|334
5VYC|1|i1|G|335
5VYC|1|i1|A|336
5VYC|1|i1|C|337
5VYC|1|i1|G|338
5VYC|1|i1|A|339
5VYC|1|i1|C|340
5VYC|1|i1|C|341

Current chains

Chain i1

Human 18S ribosomal RNA

Nearby chains

Chain E1

40S ribosomal protein S4, X isoform

Chain G1

40S ribosomal protein S6

Chain I1

40S ribosomal protein S8

Chain Z6

40S ribosomal protein S25