J5_5VYC_002
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- GUCGCUCGCUCCUCUCCCACUUG*CAUGCCGACGGGCGCUGAC*GGAUGCGUGCAUU*ACCUCGGGCCGAUCGCAC*GGCGACGACC
- Length
- 83 nucleotides
- Bulged bases
- 5VYC|1|i2|U|128, 5VYC|1|i2|C|129, 5VYC|1|i2|G|130, 5VYC|1|i2|C|131, 5VYC|1|i2|U|132, 5VYC|1|i2|C|133, 5VYC|1|i2|C|134, 5VYC|1|i2|U|135, 5VYC|1|i2|C|136, 5VYC|1|i2|U|137, 5VYC|1|i2|C|138, 5VYC|1|i2|C|139, 5VYC|1|i2|C|140, 5VYC|1|i2|C|142, 5VYC|1|i2|U|143, 5VYC|1|i2|G|183, 5VYC|1|i2|U|305, 5VYC|1|i2|C|306, 5VYC|1|i2|G|307, 5VYC|1|i2|G|308, 5VYC|1|i2|C|340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5VYC|1|i2|G|123
5VYC|1|i2|U|124
5VYC|1|i2|C|125
5VYC|1|i2|G|126
5VYC|1|i2|C|127
5VYC|1|i2|U|128
5VYC|1|i2|C|129
5VYC|1|i2|G|130
5VYC|1|i2|C|131
5VYC|1|i2|U|132
5VYC|1|i2|C|133
5VYC|1|i2|C|134
5VYC|1|i2|U|135
5VYC|1|i2|C|136
5VYC|1|i2|U|137
5VYC|1|i2|C|138
5VYC|1|i2|C|139
5VYC|1|i2|C|140
5VYC|1|i2|A|141
5VYC|1|i2|C|142
5VYC|1|i2|U|143
5VYC|1|i2|U|144
5VYC|1|i2|G|145
*
5VYC|1|i2|C|174
5VYC|1|i2|A|175
5VYC|1|i2|U|176
5VYC|1|i2|G|177
5VYC|1|i2|C|178
5VYC|1|i2|C|179
5VYC|1|i2|G|180
5VYC|1|i2|A|181
5VYC|1|i2|C|182
5VYC|1|i2|G|183
5VYC|1|i2|G|184
5VYC|1|i2|G|185
5VYC|1|i2|C|186
5VYC|1|i2|G|187
5VYC|1|i2|C|188
5VYC|1|i2|U|189
5VYC|1|i2|G|190
5VYC|1|i2|A|191
5VYC|1|i2|C|192
*
5VYC|1|i2|G|207
5VYC|1|i2|G|208
5VYC|1|i2|A|209
5VYC|1|i2|U|210
5VYC|1|i2|G|211
5VYC|1|i2|C|212
5VYC|1|i2|G|213
5VYC|1|i2|U|214
5VYC|1|i2|G|215
5VYC|1|i2|C|216
5VYC|1|i2|A|217
5VYC|1|i2|U|218
5VYC|1|i2|U|219
*
5VYC|1|i2|A|302
5VYC|1|i2|C|303
5VYC|1|i2|C|304
5VYC|1|i2|U|305
5VYC|1|i2|C|306
5VYC|1|i2|G|307
5VYC|1|i2|G|308
5VYC|1|i2|G|309
5VYC|1|i2|C|310
5VYC|1|i2|C|311
5VYC|1|i2|G|312
5VYC|1|i2|A|313
5VYC|1|i2|U|314
5VYC|1|i2|C|315
5VYC|1|i2|G|316
5VYC|1|i2|C|317
5VYC|1|i2|A|318
5VYC|1|i2|C|319
*
5VYC|1|i2|G|332
5VYC|1|i2|G|333
5VYC|1|i2|C|334
5VYC|1|i2|G|335
5VYC|1|i2|A|336
5VYC|1|i2|C|337
5VYC|1|i2|G|338
5VYC|1|i2|A|339
5VYC|1|i2|C|340
5VYC|1|i2|C|341
Current chains
- Chain i2
- Human 18S ribosomal RNA
Nearby chains
- Chain E2
- 40S ribosomal protein S4, X isoform
- Chain F5
- 40S ribosomal protein S5
- Chain G2
- 40S ribosomal protein S6
- Chain I2
- 40S ribosomal protein S8
- Chain S5
- 40S ribosomal protein S18
- Chain Z5
- 40S ribosomal protein S25
Coloring options: