J5_5W4K_007
3D structure
- PDB id
- 5W4K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5W4K|1|1A|U|2098, 5W4K|1|1A|G|2440, 5W4K|1|1A|G|2441, 5W4K|1|1A|A|2442, 5W4K|1|1A|U|2443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5W4K_007 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.053
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5W4K|1|1A|U|2096
5W4K|1|1A|U|2097
5W4K|1|1A|U|2098
5W4K|1|1A|A|2099
*
5W4K|1|1A|U|2255
5W4K|1|1A|U|2256
5W4K|1|1A|U|2257
5W4K|1|1A|G|2258
*
5W4K|1|1A|C|2270
5W4K|1|1A|G|2271
*
5W4K|1|1A|C|2293
5W4K|1|1A|G|2294
*
5W4K|1|1A|C|2439
5W4K|1|1A|G|2440
5W4K|1|1A|G|2441
5W4K|1|1A|A|2442
5W4K|1|1A|U|2443
5W4K|1|1A|A|2444
5W4K|1|1A|A|2445
5W4K|1|1A|A|2446
5W4K|1|1A|A|2447
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 11
- 50S ribosomal protein L28
- Chain 16
- 50S ribosomal protein L33
- Chain 1D
- 50S ribosomal protein L2
- Chain 1P
- 50S ribosomal protein L15
- Chain 1y
- Transfer RNA; tRNA
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