3D structure

PDB id
5WE4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu wt complex with GppNHp
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
5WE4|1|A|U|1758, 5WE4|1|A|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5WE4_004 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.0681
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

5WE4|1|A|G|1674
5WE4|1|A|C|1675
5WE4|1|A|A|1676
5WE4|1|A|A|1677
5WE4|1|A|A|1678
5WE4|1|A|A|1679
5WE4|1|A|U|1680
5WE4|1|A|G|1681
5WE4|1|A|G|1682
*
5WE4|1|A|C|1706
5WE4|1|A|G|1707
*
5WE4|1|A|U|1751
5WE4|1|A|C|1752
*
5WE4|1|A|G|1756
5WE4|1|A|A|1757
5WE4|1|A|U|1758
5WE4|1|A|A|1759
5WE4|1|A|C|1760
5WE4|1|A|C|1761
5WE4|1|A|A|1762
5WE4|1|A|G|1763
5WE4|1|A|C|1764
*
5WE4|1|A|G|1988
5WE4|1|A|G|1989
5WE4|1|A|C|1990

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain K
50S ribosomal protein L14
Chain P
50S ribosomal protein L19
Chain a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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