3D structure

PDB id
5WFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
5WFK|1|A|U|1758, 5WFK|1|A|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5WFK_005 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.0741
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

5WFK|1|A|G|1674
5WFK|1|A|C|1675
5WFK|1|A|A|1676
5WFK|1|A|A|1677
5WFK|1|A|A|1678
5WFK|1|A|A|1679
5WFK|1|A|U|1680
5WFK|1|A|G|1681
5WFK|1|A|G|1682
*
5WFK|1|A|C|1706
5WFK|1|A|G|1707
*
5WFK|1|A|U|1751
5WFK|1|A|C|1752
*
5WFK|1|A|G|1756
5WFK|1|A|A|1757
5WFK|1|A|U|1758
5WFK|1|A|A|1759
5WFK|1|A|C|1760
5WFK|1|A|C|1761
5WFK|1|A|A|1762
5WFK|1|A|G|1763
5WFK|1|A|C|1764
*
5WFK|1|A|G|1988
5WFK|1|A|G|1989
5WFK|1|A|C|1990

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain K
50S ribosomal protein L14
Chain P
50S ribosomal protein L19
Chain a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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