J5_5WIS_004
3D structure
- PDB id
- 5WIS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5WIS|1|1A|U|1301
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5WIS_004 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0514
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5WIS|1|1A|C|607
5WIS|1|1A|G|608
5WIS|1|1A|A|609
5WIS|1|1A|C|610
5WIS|1|1A|U|611
5WIS|1|1A|C|612
*
5WIS|1|1A|G|715
5WIS|1|1A|G|716
5WIS|1|1A|A|717
5WIS|1|1A|C|718
*
5WIS|1|1A|G|856
5WIS|1|1A|U|857
5WIS|1|1A|U|858
5WIS|1|1A|C|859
*
5WIS|1|1A|G|1240
5WIS|1|1A|C|1241
*
5WIS|1|1A|G|1296
5WIS|1|1A|C|1297
5WIS|1|1A|G|1298
5WIS|1|1A|A|1299
5WIS|1|1A|A|1300
5WIS|1|1A|U|1301
5WIS|1|1A|G|1302
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 18
- 50S ribosomal protein L35
- Chain 1F
- 50S ribosomal protein L4
- Chain 1P
- 50S ribosomal protein L15
- Chain 1U
- 50S ribosomal protein L20
- Chain 1V
- 50S ribosomal protein L21
Coloring options: