J5_5WIS_018

3D structure

PDB id

5WIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5WIS_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.085

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5WIS|1|2a|C|36
5WIS|1|2a|U|37
5WIS|1|2a|G|38
5WIS|1|2a|G|39
*
5WIS|1|2a|C|403
5WIS|1|2a|U|404
5WIS|1|2a|U|405
5WIS|1|2a|G|406
*
5WIS|1|2a|C|436
5WIS|1|2a|U|437
5WIS|1|2a|G|438
5WIS|1|2a|A|439
5WIS|1|2a|A|441
5WIS|1|2a|C|442
*
5WIS|1|2a|G|492
5WIS|1|2a|G|493
5WIS|1|2a|U|494
5WIS|1|2a|A|495
5WIS|1|2a|A|496
5WIS|1|2a|U|498
5WIS|1|2a|A|499
5WIS|1|2a|G|500
*
5WIS|1|2a|C|545
5WIS|1|2a|G|546
5WIS|1|2a|A|547
5WIS|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12