J5_5WIT_010

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5WIT|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5WIT_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0657

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5WIT|1|2A|C|47
5WIT|1|2A|G|48
5WIT|1|2A|A|49
5WIT|1|2A|U|50
5WIT|1|2A|G|51
5WIT|1|2A|A|52
5WIT|1|2A|A|53
5WIT|1|2A|G|54
*
5WIT|1|2A|C|116
5WIT|1|2A|G|117
5WIT|1|2A|A|118
5WIT|1|2A|A|119
5WIT|1|2A|U|120
5WIT|1|2A|G|121
*
5WIT|1|2A|C|130
5WIT|1|2A|G|131
*
5WIT|1|2A|C|148
5WIT|1|2A|A|149
5WIT|1|2A|C|150
*
5WIT|1|2A|G|176
5WIT|1|2A|G|177
5WIT|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23