3D structure

PDB id
5WNR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5WNR_001 not in the Motif Atlas
Homologous match to J5_4LFB_001
Geometric discrepancy: 0.0567
The information below is about J5_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_70703.1
Basepair signature
cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
Number of instances in this motif group
1

Unit IDs

5WNR|1|A|C|36
5WNR|1|A|U|37
5WNR|1|A|G|38
5WNR|1|A|G|39
*
5WNR|1|A|C|403
5WNR|1|A|U|404
5WNR|1|A|U|405
5WNR|1|A|G|406
*
5WNR|1|A|C|436
5WNR|1|A|U|437
5WNR|1|A|G|438
5WNR|1|A|A|439
5WNR|1|A|A|440
5WNR|1|A|C|442
*
5WNR|1|A|G|492
5WNR|1|A|G|494
5WNR|1|A|U|495
5WNR|1|A|A|496
5WNR|1|A|A|497
5WNR|1|A|U|498
5WNR|1|A|A|499
5WNR|1|A|G|500
*
5WNR|1|A|C|545
5WNR|1|A|G|546
5WNR|1|A|A|547
5WNR|1|A|G|548

Current chains

Chain A
16S Ribosomal RNA rRNA

Nearby chains

Chain D
30S ribosomal protein S4
Chain L
30S ribosomal protein S12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5231 s