J5_5WNS_002

3D structure

PDB id

5WNS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

5WNS|1|A|A|109, 5WNS|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5WNS_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0573

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5WNS|1|A|C|58
5WNS|1|A|A|59
5WNS|1|A|A|60
5WNS|1|A|G|61
*
5WNS|1|A|C|106
5WNS|1|A|G|107
5WNS|1|A|G|108
5WNS|1|A|A|109
5WNS|1|A|C|110
5WNS|1|A|G|111
5WNS|1|A|G|112
5WNS|1|A|G|113
*
5WNS|1|A|C|314
5WNS|1|A|A|315
5WNS|1|A|G|316
*
5WNS|1|A|C|337
5WNS|1|A|A|338
5WNS|1|A|C|339
*
5WNS|1|A|G|350
5WNS|1|A|G|351
5WNS|1|A|C|352
5WNS|1|A|A|353
5WNS|1|A|G|354

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20