J5_5WNT_002

3D structure

PDB id

5WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

5WNT|1|A|A|109, 5WNT|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5WNT_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0511

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5WNT|1|A|C|58
5WNT|1|A|A|59
5WNT|1|A|A|60
5WNT|1|A|G|61
*
5WNT|1|A|C|106
5WNT|1|A|G|107
5WNT|1|A|G|108
5WNT|1|A|A|109
5WNT|1|A|C|110
5WNT|1|A|G|111
5WNT|1|A|G|112
5WNT|1|A|G|113
*
5WNT|1|A|C|314
5WNT|1|A|A|315
5WNT|1|A|G|316
*
5WNT|1|A|C|337
5WNT|1|A|A|338
5WNT|1|A|C|339
*
5WNT|1|A|G|350
5WNT|1|A|G|351
5WNT|1|A|C|352
5WNT|1|A|A|353
5WNT|1|A|G|354

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain P

RIBOSOMAL PROTEIN S16

Chain T

RIBOSOMAL PROTEIN S20