J5_5WNU_002

3D structure

PDB id

5WNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

5WNU|1|A|A|109, 5WNU|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5WNU_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0654

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5WNU|1|A|C|58
5WNU|1|A|A|59
5WNU|1|A|A|60
5WNU|1|A|G|61
*
5WNU|1|A|C|106
5WNU|1|A|G|107
5WNU|1|A|G|108
5WNU|1|A|A|109
5WNU|1|A|C|110
5WNU|1|A|G|111
5WNU|1|A|G|112
5WNU|1|A|G|113
*
5WNU|1|A|C|314
5WNU|1|A|A|315
5WNU|1|A|G|316
*
5WNU|1|A|C|337
5WNU|1|A|A|338
5WNU|1|A|C|339
*
5WNU|1|A|G|350
5WNU|1|A|G|351
5WNU|1|A|C|352
5WNU|1|A|A|353
5WNU|1|A|G|354

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20