J5_5WYK_001
3D structure
- PDB id
- 5WYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- 5WYK|1|SA|A|541, 5WYK|1|SA|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5WYK|1|SA|C|31
5WYK|1|SA|U|32
5WYK|1|SA|U|33
5WYK|1|SA|G|34
5WYK|1|SA|U|35
*
5WYK|1|SA|A|473
5WYK|1|SA|A|474
5WYK|1|SA|A|475
5WYK|1|SA|U|476
5WYK|1|SA|A|477
5WYK|1|SA|A|478
5WYK|1|SA|C|479
*
5WYK|1|SA|G|509
5WYK|1|SA|G|510
5WYK|1|SA|A|511
5WYK|1|SA|A|512
5WYK|1|SA|U|513
5WYK|1|SA|G|514
5WYK|1|SA|A|515
5WYK|1|SA|G|516
*
5WYK|1|SA|C|536
5WYK|1|SA|G|537
5WYK|1|SA|A|538
5WYK|1|SA|G|539
5WYK|1|SA|G|540
5WYK|1|SA|A|541
5WYK|1|SA|A|542
5WYK|1|SA|C|543
5WYK|1|SA|A|544
5WYK|1|SA|A|545
5WYK|1|SA|U|546
*
5WYK|1|SA|A|592
5WYK|1|SA|U|593
5WYK|1|SA|A|594
5WYK|1|SA|G|595
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain B1
- Ribosome biogenesis protein BMS1
- Chain SK
- 40S ribosomal protein S9-A
- Chain SY
- 40S ribosomal protein S23-A
- Chain Sf
- 40S ribosomal protein S30-A
- Chain UC
- Unassigned helices
Coloring options: