Loop J5_5WYK

3D structure

PDB id: 5WYK (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.5 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UGUA*UUUUCGA*UGGUU
Length: 47 nucleotides
Bulged bases: 5WYK|1|SA|G|127, 5WYK|1|SA|U|132, 5WYK|1|SA|U|133, 5WYK|1|SA|U|134, 5WYK|1|SA|A|135, 5WYK|1|SA|C|136, 5WYK|1|SA|U|137, 5WYK|1|SA|A|140, 5WYK|1|SA|U|178, 5WYK|1|SA|A|179, 5WYK|1|SA|A|180, 5WYK|1|SA|U|260
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5WYK|1|SA|A|124
5WYK|1|SA|U|125
5WYK|1|SA|A|126
5WYK|1|SA|G|127
5WYK|1|SA|U|128
5WYK|1|SA|U|129
5WYK|1|SA|C|130
5WYK|1|SA|C|131
5WYK|1|SA|U|132
5WYK|1|SA|U|133
5WYK|1|SA|U|134
5WYK|1|SA|A|135
5WYK|1|SA|C|136
5WYK|1|SA|U|137
5WYK|1|SA|A|138
5WYK|1|SA|C|139
5WYK|1|SA|A|140
5WYK|1|SA|U|141
5WYK|1|SA|G|142
5WYK|1|SA|G|143
*
5WYK|1|SA|C|172
5WYK|1|SA|A|173
5WYK|1|SA|U|174
5WYK|1|SA|G|175
5WYK|1|SA|C|176
5WYK|1|SA|U|177
5WYK|1|SA|U|178
5WYK|1|SA|A|179
5WYK|1|SA|A|180
5WYK|1|SA|A|181
5WYK|1|SA|A|182
*
5WYK|1|SA|U|203
5WYK|1|SA|G|204
5WYK|1|SA|U|205
5WYK|1|SA|A|206
*
5WYK|1|SA|U|259
5WYK|1|SA|U|260
5WYK|1|SA|U|261
5WYK|1|SA|U|262
5WYK|1|SA|C|263
5WYK|1|SA|G|264
5WYK|1|SA|A|265
*
5WYK|1|SA|U|289
5WYK|1|SA|G|290
5WYK|1|SA|G|291
5WYK|1|SA|U|292
5WYK|1|SA|U|293

Current chains

Chain SA: 18S ribosomal RNA

Nearby chains

Chain SF: 40S ribosomal protein S4-A
Chain SJ: 40S ribosomal protein S8-A

J5_5WYK_002