J5_5XYU_003

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CAAG*CGAACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

5XYU|1|A|A|105, 5XYU|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5XYU_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1106

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5XYU|1|A|C|62
5XYU|1|A|A|63
5XYU|1|A|A|64
5XYU|1|A|G|65
*
5XYU|1|A|C|102
5XYU|1|A|G|103
5XYU|1|A|A|104
5XYU|1|A|A|105
5XYU|1|A|C|106
5XYU|1|A|G|107
5XYU|1|A|G|108
5XYU|1|A|G|109
*
5XYU|1|A|C|314
5XYU|1|A|A|315
5XYU|1|A|C|316
*
5XYU|1|A|G|337
5XYU|1|A|A|338
5XYU|1|A|C|339
*
5XYU|1|A|G|350
5XYU|1|A|G|351
5XYU|1|A|C|352
5XYU|1|A|A|353
5XYU|1|A|G|354

Current chains

Chain A

16S RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20