J5_5Z3G_004
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 5Z3G|1|A|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5Z3G_004 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.1211
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5Z3G|1|A|G|658
5Z3G|1|A|G|659
5Z3G|1|A|A|660
5Z3G|1|A|G|661
5Z3G|1|A|U|662
5Z3G|1|A|C|663
*
5Z3G|1|A|G|799
5Z3G|1|A|G|800
5Z3G|1|A|A|801
5Z3G|1|A|C|802
*
5Z3G|1|A|G|941
5Z3G|1|A|U|942
5Z3G|1|A|U|943
5Z3G|1|A|C|944
*
5Z3G|1|A|G|1375
5Z3G|1|A|C|1376
*
5Z3G|1|A|G|1431
5Z3G|1|A|C|1432
5Z3G|1|A|A|1433
5Z3G|1|A|G|1434
5Z3G|1|A|A|1435
5Z3G|1|A|U|1436
5Z3G|1|A|C|1437
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain B
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L13-A
- Chain R
- 60S ribosomal protein L15-A
- Chain Z
- Protein MAK16
- Chain d
- Unassigned
- Chain i
- 60S ribosomal protein L32
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