J5_5Z3G_005
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- UCAAAUUUGAAA*UAAUUUGGAG*CGAAGAGUCG*CUAAGUGG*CUAAA
- Length
- 45 nucleotides
- Bulged bases
- 5Z3G|1|A|U|117, 5Z3G|1|A|G|120, 5Z3G|1|A|A|121, 5Z3G|1|A|G|156, 5Z3G|1|A|A|266, 5Z3G|1|A|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5Z3G|1|A|U|112
5Z3G|1|A|C|113
5Z3G|1|A|A|114
5Z3G|1|A|A|115
5Z3G|1|A|A|116
5Z3G|1|A|U|117
5Z3G|1|A|U|118
5Z3G|1|A|U|119
5Z3G|1|A|G|120
5Z3G|1|A|A|121
5Z3G|1|A|A|122
5Z3G|1|A|A|123
*
5Z3G|1|A|U|149
5Z3G|1|A|A|150
5Z3G|1|A|A|151
5Z3G|1|A|U|152
5Z3G|1|A|U|153
5Z3G|1|A|U|154
5Z3G|1|A|G|155
5Z3G|1|A|G|156
5Z3G|1|A|A|157
5Z3G|1|A|G|158
*
5Z3G|1|A|C|263
5Z3G|1|A|G|264
5Z3G|1|A|A|265
5Z3G|1|A|A|266
5Z3G|1|A|G|267
5Z3G|1|A|A|268
5Z3G|1|A|G|269
5Z3G|1|A|U|270
5Z3G|1|A|C|271
5Z3G|1|A|G|272
*
5Z3G|1|A|C|293
5Z3G|1|A|U|294
5Z3G|1|A|A|295
5Z3G|1|A|A|296
5Z3G|1|A|G|297
5Z3G|1|A|U|298
5Z3G|1|A|G|299
5Z3G|1|A|G|300
*
5Z3G|1|A|C|315
5Z3G|1|A|U|316
5Z3G|1|A|A|317
5Z3G|1|A|A|318
5Z3G|1|A|A|319
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain K
- 60S ribosomal protein L8-A
- Chain P
- 60S ribosomal protein L13-A
- Chain R
- 60S ribosomal protein L15-A
- Chain Y
- ATP-dependent RNA helicase HAS1
- Chain a
- Ribosome biogenesis protein BRX1
- Chain d
- Unassigned
- Chain l
- 60S ribosomal protein L35-A
- Chain m
- 60S ribosomal protein L36-A
Coloring options: