J5_5ZEB_001

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5ZEB|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5ZEB_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0963

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5ZEB|1|A|C|44
5ZEB|1|A|G|45
5ZEB|1|A|A|46
5ZEB|1|A|U|47
5ZEB|1|A|G|48
5ZEB|1|A|A|49
5ZEB|1|A|A|50
5ZEB|1|A|G|51
*
5ZEB|1|A|C|113
5ZEB|1|A|G|114
5ZEB|1|A|A|115
5ZEB|1|A|A|116
5ZEB|1|A|U|117
5ZEB|1|A|G|118
*
5ZEB|1|A|C|127
5ZEB|1|A|G|128
*
5ZEB|1|A|C|147
5ZEB|1|A|A|148
5ZEB|1|A|C|149
*
5ZEB|1|A|G|175
5ZEB|1|A|G|176
5ZEB|1|A|G|177

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L34

Chain U

50S ribosomal protein L23

Chain Z

50S ribosomal protein L29