J5_5ZEP_011
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAG*CGAACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5ZEP|1|a|A|105, 5ZEP|1|a|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5ZEP_011 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0924
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5ZEP|1|a|C|62
5ZEP|1|a|A|63
5ZEP|1|a|A|64
5ZEP|1|a|G|65
*
5ZEP|1|a|C|102
5ZEP|1|a|G|103
5ZEP|1|a|A|104
5ZEP|1|a|A|105
5ZEP|1|a|C|106
5ZEP|1|a|G|107
5ZEP|1|a|G|108
5ZEP|1|a|G|109
*
5ZEP|1|a|C|314
5ZEP|1|a|A|315
5ZEP|1|a|C|316
*
5ZEP|1|a|G|337
5ZEP|1|a|A|338
5ZEP|1|a|C|339
*
5ZEP|1|a|G|350
5ZEP|1|a|G|351
5ZEP|1|a|C|352
5ZEP|1|a|A|353
5ZEP|1|a|G|354
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L14
- Chain Q
- 50S ribosomal protein L19
- Chain p
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
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