J5_5ZET_001

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5ZET|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5ZET_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0963

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5ZET|1|A|C|44
5ZET|1|A|G|45
5ZET|1|A|A|46
5ZET|1|A|U|47
5ZET|1|A|G|48
5ZET|1|A|A|49
5ZET|1|A|A|50
5ZET|1|A|G|51
*
5ZET|1|A|C|113
5ZET|1|A|G|114
5ZET|1|A|A|115
5ZET|1|A|A|116
5ZET|1|A|U|117
5ZET|1|A|G|118
*
5ZET|1|A|C|127
5ZET|1|A|G|128
*
5ZET|1|A|C|147
5ZET|1|A|A|148
5ZET|1|A|C|149
*
5ZET|1|A|G|175
5ZET|1|A|G|176
5ZET|1|A|G|177

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L34

Chain U

50S ribosomal protein L23