J5_5ZET_006

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAAAUGC*GA*UG*CAAACCAGU*AAC

Length

25 nucleotides

Bulged bases

5ZET|1|A|A|1975, 5ZET|1|A|G|1980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5ZET_006 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.1153

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5ZET|1|A|G|1892
5ZET|1|A|C|1893
5ZET|1|A|A|1894
5ZET|1|A|A|1895
5ZET|1|A|A|1896
5ZET|1|A|A|1897
5ZET|1|A|U|1898
5ZET|1|A|G|1899
5ZET|1|A|C|1900
*
5ZET|1|A|G|1924
5ZET|1|A|A|1925
*
5ZET|1|A|U|1968
5ZET|1|A|G|1969
*
5ZET|1|A|C|1973
5ZET|1|A|A|1974
5ZET|1|A|A|1975
5ZET|1|A|A|1976
5ZET|1|A|C|1977
5ZET|1|A|C|1978
5ZET|1|A|A|1979
5ZET|1|A|G|1980
5ZET|1|A|U|1981
*
5ZET|1|A|A|2212
5ZET|1|A|A|2213
5ZET|1|A|C|2214

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14

Chain Q

50S ribosomal protein L19