J5_5ZEU_003

3D structure

PDB id

5ZEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAG*CGAACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

5ZEU|1|a|A|105, 5ZEU|1|a|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5ZEU_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0924

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5ZEU|1|a|C|62
5ZEU|1|a|A|63
5ZEU|1|a|A|64
5ZEU|1|a|G|65
*
5ZEU|1|a|C|102
5ZEU|1|a|G|103
5ZEU|1|a|A|104
5ZEU|1|a|A|105
5ZEU|1|a|C|106
5ZEU|1|a|G|107
5ZEU|1|a|G|108
5ZEU|1|a|G|109
*
5ZEU|1|a|C|314
5ZEU|1|a|A|315
5ZEU|1|a|C|316
*
5ZEU|1|a|G|337
5ZEU|1|a|A|338
5ZEU|1|a|C|339
*
5ZEU|1|a|G|350
5ZEU|1|a|G|351
5ZEU|1|a|C|352
5ZEU|1|a|A|353
5ZEU|1|a|G|354

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20