J5_6AWB_002

3D structure

PDB id

6AWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6AWB|1|A|A|109, 6AWB|1|A|C|352, 6AWB|1|A|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6AWB_002 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.274

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6AWB|1|A|C|58
6AWB|1|A|A|59
6AWB|1|A|A|60
6AWB|1|A|G|61
*
6AWB|1|A|C|106
6AWB|1|A|G|107
6AWB|1|A|G|108
6AWB|1|A|A|109
6AWB|1|A|C|110
6AWB|1|A|G|111
6AWB|1|A|G|112
6AWB|1|A|G|113
*
6AWB|1|A|C|314
6AWB|1|A|A|315
6AWB|1|A|C|316
*
6AWB|1|A|G|337
6AWB|1|A|A|338
6AWB|1|A|C|339
*
6AWB|1|A|G|350
6AWB|1|A|G|351
6AWB|1|A|C|352
6AWB|1|A|A|353
6AWB|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S16

Chain W

30S ribosomal protein S20