J5_6AWD_001

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CUGG*CGUG*CUUU*AAG*CAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6AWD|1|A|C|36
6AWD|1|A|U|37
6AWD|1|A|G|38
6AWD|1|A|G|39
*
6AWD|1|A|C|403
6AWD|1|A|G|404
6AWD|1|A|U|405
6AWD|1|A|G|406
*
6AWD|1|A|C|436
6AWD|1|A|U|437
6AWD|1|A|U|438
6AWD|1|A|U|439
*
6AWD|1|A|A|498
6AWD|1|A|A|499
6AWD|1|A|G|500
*
6AWD|1|A|C|545
6AWD|1|A|A|546
6AWD|1|A|A|547
6AWD|1|A|G|548

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S4

Chain O

30S ribosomal protein S12