J5_6B4V_007
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 6B4V|1|B|A|2062, 6B4V|1|B|A|2448, 6B4V|1|B|U|2449, 6B4V|1|B|U|2609
- QA status
- Modified nucleotides: 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6B4V|1|B|A|2057
6B4V|1|B|A|2058
6B4V|1|B|A|2059
6B4V|1|B|A|2060
6B4V|1|B|G|2061
6B4V|1|B|A|2062
6B4V|1|B|C|2063
6B4V|1|B|C|2064
*
6B4V|1|B|G|2446
6B4V|1|B|G|2447
6B4V|1|B|A|2448
6B4V|1|B|U|2449
6B4V|1|B|A|2450
6B4V|1|B|A|2451
6B4V|1|B|C|2452
6B4V|1|B|A|2453
*
6B4V|1|B|U|2500
6B4V|1|B|C|2501
6B4V|1|B|G|2502
6B4V|1|B|2MA|2503
6B4V|1|B|U|2504
6B4V|1|B|G|2505
6B4V|1|B|U|2506
6B4V|1|B|C|2507
*
6B4V|1|B|G|2582
6B4V|1|B|G|2583
6B4V|1|B|U|2584
6B4V|1|B|U|2585
6B4V|1|B|C|2586
6B4V|1|B|A|2587
6B4V|1|B|G|2588
*
6B4V|1|B|C|2606
6B4V|1|B|G|2607
6B4V|1|B|G|2608
6B4V|1|B|U|2609
6B4V|1|B|C|2610
6B4V|1|B|U|2611
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain CA
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L2
- Chain F
- 50S ribosomal protein L3
- Chain G
- 50S ribosomal protein L4
- Chain IA
- Transfer RNA; tRNA
- Chain JA
- Peptide chain release factor 1
- Chain M
- 50S ribosomal protein L15
- Chain N
- 50S ribosomal protein L16
- Chain X
- 50S ribosomal protein L27
Coloring options: