J5_6BOK_011

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6BOK|1|EB|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6BOK_011 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0688

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6BOK|1|EB|C|47
6BOK|1|EB|G|48
6BOK|1|EB|A|49
6BOK|1|EB|U|50
6BOK|1|EB|G|51
6BOK|1|EB|A|52
6BOK|1|EB|A|53
6BOK|1|EB|G|54
*
6BOK|1|EB|C|116
6BOK|1|EB|G|117
6BOK|1|EB|A|118
6BOK|1|EB|A|119
6BOK|1|EB|U|120
6BOK|1|EB|G|121
*
6BOK|1|EB|C|130
6BOK|1|EB|G|131
*
6BOK|1|EB|C|148
6BOK|1|EB|A|149
6BOK|1|EB|C|150
*
6BOK|1|EB|G|176
6BOK|1|EB|G|177
6BOK|1|EB|G|178

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain HC

50S ribosomal protein L34

Chain XB

50S ribosomal protein L23