3D structure

PDB id
6BU8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome with S1 domains 1 and 2 (Class 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CAG*CGUAC*GGG*CA*UG
Length
15 nucleotides
Bulged bases
6BU8|1|01|A|532, 6BU8|1|01|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6BU8_002 not in the Motif Atlas
Homologous match to J5_5J7L_014
Geometric discrepancy: 0.0959
The information below is about J5_5J7L_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6BU8|1|01|C|531
6BU8|1|01|A|532
6BU8|1|01|G|533
*
6BU8|1|01|C|560
6BU8|1|01|G|561
6BU8|1|01|U|562
6BU8|1|01|A|563
6BU8|1|01|C|564
*
6BU8|1|01|G|577
6BU8|1|01|G|578
6BU8|1|01|G|579
*
6BU8|1|01|C|1261
6BU8|1|01|A|1262
*
6BU8|1|01|U|2017
6BU8|1|01|G|2018

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 06
50S ribosomal protein L4
Chain 12
50S ribosomal protein L13
Chain 19
50S ribosomal protein L20
Chain 20
50S ribosomal protein L21
Chain 21
50S ribosomal protein L22
Chain 30
50S ribosomal protein L32

Coloring options:


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