3D structure

PDB id
6BUW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6BUW_001 not in the Motif Atlas
Homologous match to J5_4LFB_001
Geometric discrepancy: 0.0775
The information below is about J5_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_70703.1
Basepair signature
cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
Number of instances in this motif group
1

Unit IDs

6BUW|1|QA|C|36
6BUW|1|QA|U|37
6BUW|1|QA|G|38
6BUW|1|QA|G|39
*
6BUW|1|QA|C|403
6BUW|1|QA|U|404
6BUW|1|QA|U|405
6BUW|1|QA|G|406
*
6BUW|1|QA|C|436
6BUW|1|QA|U|437
6BUW|1|QA|G|438
6BUW|1|QA|A|439
6BUW|1|QA|A|440
6BUW|1|QA|C|442
*
6BUW|1|QA|G|492
6BUW|1|QA|G|493
6BUW|1|QA|U|494
6BUW|1|QA|A|495
6BUW|1|QA|A|496
6BUW|1|QA|U|497
6BUW|1|QA|A|498
6BUW|1|QA|G|500
*
6BUW|1|QA|C|545
6BUW|1|QA|G|546
6BUW|1|QA|A|547
6BUW|1|QA|G|548

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QD
30S ribosomal protein S4
Chain QL
30S ribosomal protein S12
Chain YI
50S ribosomal protein L9

Coloring options:


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