J5_6BUW_010

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6BUW_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0716

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6BUW|1|XA|C|36
6BUW|1|XA|U|37
6BUW|1|XA|G|38
6BUW|1|XA|G|39
*
6BUW|1|XA|C|403
6BUW|1|XA|U|404
6BUW|1|XA|U|405
6BUW|1|XA|G|406
*
6BUW|1|XA|C|436
6BUW|1|XA|U|437
6BUW|1|XA|G|438
6BUW|1|XA|A|439
6BUW|1|XA|A|440
6BUW|1|XA|C|442
*
6BUW|1|XA|G|492
6BUW|1|XA|G|493
6BUW|1|XA|U|494
6BUW|1|XA|A|495
6BUW|1|XA|A|496
6BUW|1|XA|U|497
6BUW|1|XA|A|498
6BUW|1|XA|G|500
*
6BUW|1|XA|C|545
6BUW|1|XA|G|546
6BUW|1|XA|A|547
6BUW|1|XA|G|548

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12