J5_6BUW_019
3D structure
- PDB id
- 6BUW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6BUW|1|YA|U|2076, 6BUW|1|YA|G|2428, 6BUW|1|YA|G|2429, 6BUW|1|YA|A|2430, 6BUW|1|YA|U|2431, 6BUW|1|YA|A|2434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6BUW_019 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.0888
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6BUW|1|YA|U|2074
6BUW|1|YA|U|2075
6BUW|1|YA|U|2076
6BUW|1|YA|A|2077
*
6BUW|1|YA|U|2243
6BUW|1|YA|U|2244
6BUW|1|YA|U|2245
6BUW|1|YA|G|2246
*
6BUW|1|YA|C|2258
6BUW|1|YA|G|2259
*
6BUW|1|YA|C|2281
6BUW|1|YA|G|2282
*
6BUW|1|YA|C|2427
6BUW|1|YA|G|2428
6BUW|1|YA|G|2429
6BUW|1|YA|A|2430
6BUW|1|YA|U|2431
6BUW|1|YA|A|2432
6BUW|1|YA|A|2433
6BUW|1|YA|A|2434
6BUW|1|YA|A|2435
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y0
- 50S ribosomal protein L27
- Chain Y1
- 50S ribosomal protein L28
- Chain Y6
- 50S ribosomal protein L33
- Chain YD
- 50S ribosomal protein L2
- Chain YP
- 50S ribosomal protein L15
Coloring options: