J5_6BY1_004

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6BY1_004 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1347

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6BY1|1|BA|C|36
6BY1|1|BA|U|37
6BY1|1|BA|G|38
6BY1|1|BA|G|39
*
6BY1|1|BA|C|403
6BY1|1|BA|G|404
6BY1|1|BA|U|405
6BY1|1|BA|G|406
*
6BY1|1|BA|C|436
6BY1|1|BA|U|437
6BY1|1|BA|U|438
6BY1|1|BA|U|439
6BY1|1|BA|C|440
*
6BY1|1|BA|G|497
6BY1|1|BA|A|498
6BY1|1|BA|A|499
6BY1|1|BA|G|500
*
6BY1|1|BA|C|545
6BY1|1|BA|A|546
6BY1|1|BA|A|547
6BY1|1|BA|G|548

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain BL

30S ribosomal protein S12