3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
UUUA*UUUG*CG*CG*CGGAUAAAA
Length
21 nucleotides
Bulged bases
6BZ6|1|RA|U|2076, 6BZ6|1|RA|G|2428, 6BZ6|1|RA|G|2429, 6BZ6|1|RA|A|2430, 6BZ6|1|RA|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6BZ6_009 not in the Motif Atlas
Homologous match to J5_9DFE_007
Geometric discrepancy: 0.0946
The information below is about J5_9DFE_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_39529.1
Basepair signature
cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

6BZ6|1|RA|U|2074
6BZ6|1|RA|U|2075
6BZ6|1|RA|U|2076
6BZ6|1|RA|A|2077
*
6BZ6|1|RA|U|2243
6BZ6|1|RA|U|2244
6BZ6|1|RA|U|2245
6BZ6|1|RA|G|2246
*
6BZ6|1|RA|C|2258
6BZ6|1|RA|G|2259
*
6BZ6|1|RA|C|2281
6BZ6|1|RA|G|2282
*
6BZ6|1|RA|C|2427
6BZ6|1|RA|G|2428
6BZ6|1|RA|G|2429
6BZ6|1|RA|A|2430
6BZ6|1|RA|U|2431
6BZ6|1|RA|A|2432
6BZ6|1|RA|A|2433
6BZ6|1|RA|A|2434
6BZ6|1|RA|A|2435

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R0
50S ribosomal protein L27
Chain R1
50S ribosomal protein L28
Chain R6
50S ribosomal protein L33
Chain RD
50S ribosomal protein L2
Chain RP
50S ribosomal protein L15

Coloring options:


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