J5_6BZ7_003

3D structure

PDB id

6BZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6BZ7|1|RA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6BZ7_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0897

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6BZ7|1|RA|C|47
6BZ7|1|RA|G|48
6BZ7|1|RA|A|49
6BZ7|1|RA|U|50
6BZ7|1|RA|G|51
6BZ7|1|RA|A|52
6BZ7|1|RA|A|53
6BZ7|1|RA|G|54
*
6BZ7|1|RA|C|116
6BZ7|1|RA|G|117
6BZ7|1|RA|A|118
6BZ7|1|RA|A|119
6BZ7|1|RA|U|120
6BZ7|1|RA|G|121
*
6BZ7|1|RA|C|130
6BZ7|1|RA|G|131
*
6BZ7|1|RA|C|148
6BZ7|1|RA|A|149
6BZ7|1|RA|C|150
*
6BZ7|1|RA|G|176
6BZ7|1|RA|G|177
6BZ7|1|RA|G|178

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23