J5_6BZ7_010

3D structure

PDB id

6BZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6BZ7_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.086

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6BZ7|1|XA|C|36
6BZ7|1|XA|U|37
6BZ7|1|XA|G|38
6BZ7|1|XA|G|39
*
6BZ7|1|XA|C|403
6BZ7|1|XA|U|404
6BZ7|1|XA|U|405
6BZ7|1|XA|G|406
*
6BZ7|1|XA|C|436
6BZ7|1|XA|U|437
6BZ7|1|XA|G|438
6BZ7|1|XA|A|439
6BZ7|1|XA|A|440
6BZ7|1|XA|C|442
*
6BZ7|1|XA|G|492
6BZ7|1|XA|G|493
6BZ7|1|XA|U|494
6BZ7|1|XA|A|495
6BZ7|1|XA|A|496
6BZ7|1|XA|U|497
6BZ7|1|XA|A|498
6BZ7|1|XA|G|500
*
6BZ7|1|XA|C|545
6BZ7|1|XA|G|546
6BZ7|1|XA|A|547
6BZ7|1|XA|G|548

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12