J5_6C4I_006
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6C4I|1|A|U|2076, 6C4I|1|A|G|2428, 6C4I|1|A|G|2429, 6C4I|1|A|A|2430, 6C4I|1|A|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6C4I_006 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.1112
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6C4I|1|A|U|2074
6C4I|1|A|U|2075
6C4I|1|A|U|2076
6C4I|1|A|A|2077
*
6C4I|1|A|U|2243
6C4I|1|A|U|2244
6C4I|1|A|U|2245
6C4I|1|A|G|2246
*
6C4I|1|A|C|2258
6C4I|1|A|U|2259
*
6C4I|1|A|A|2281
6C4I|1|A|G|2282
*
6C4I|1|A|C|2427
6C4I|1|A|G|2428
6C4I|1|A|G|2429
6C4I|1|A|A|2430
6C4I|1|A|U|2431
6C4I|1|A|A|2432
6C4I|1|A|A|2433
6C4I|1|A|A|2434
6C4I|1|A|A|2435
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L33
- Chain 5
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L2
- Chain M
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L27
- Chain Y
- 50S ribosomal protein L28
- Chain y
- Transfer RNA; tRNA
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