3D structure

PDB id
6C5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UUUA*UUUG*CG*CG*CGGAUAAAA
Length
21 nucleotides
Bulged bases
6C5L|1|BA|U|2076, 6C5L|1|BA|G|2428, 6C5L|1|BA|G|2429, 6C5L|1|BA|A|2430, 6C5L|1|BA|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6C5L_008 not in the Motif Atlas
Homologous match to J5_7A0S_007
Geometric discrepancy: 0.0951
The information below is about J5_7A0S_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_39529.1
Basepair signature
cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

6C5L|1|BA|U|2074
6C5L|1|BA|U|2075
6C5L|1|BA|U|2076
6C5L|1|BA|A|2077
*
6C5L|1|BA|U|2243
6C5L|1|BA|U|2244
6C5L|1|BA|U|2245
6C5L|1|BA|G|2246
*
6C5L|1|BA|C|2258
6C5L|1|BA|G|2259
*
6C5L|1|BA|C|2281
6C5L|1|BA|G|2282
*
6C5L|1|BA|C|2427
6C5L|1|BA|G|2428
6C5L|1|BA|G|2429
6C5L|1|BA|A|2430
6C5L|1|BA|U|2431
6C5L|1|BA|A|2432
6C5L|1|BA|A|2433
6C5L|1|BA|A|2434
6C5L|1|BA|A|2435

Current chains

Chain BA
23S rRNA

Nearby chains

Chain AW
Transfer RNA; tRNA
Chain B0
50S ribosomal protein L27
Chain B1
50S ribosomal protein L28
Chain BD
50S ribosomal protein L2
Chain BP
50S ribosomal protein L15

Coloring options:


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