J5_6C5L_009

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6C5L_009 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.1202

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6C5L|1|CA|C|36
6C5L|1|CA|U|37
6C5L|1|CA|G|38
6C5L|1|CA|G|39
*
6C5L|1|CA|C|403
6C5L|1|CA|U|404
6C5L|1|CA|U|405
6C5L|1|CA|G|406
*
6C5L|1|CA|C|436
6C5L|1|CA|U|437
6C5L|1|CA|G|438
6C5L|1|CA|A|439
6C5L|1|CA|A|441
6C5L|1|CA|C|442
*
6C5L|1|CA|G|492
6C5L|1|CA|G|493
6C5L|1|CA|U|494
6C5L|1|CA|A|495
6C5L|1|CA|A|496
6C5L|1|CA|U|498
6C5L|1|CA|A|499
6C5L|1|CA|G|500
*
6C5L|1|CA|C|545
6C5L|1|CA|G|546
6C5L|1|CA|A|547
6C5L|1|CA|G|548

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CD

30S ribosomal protein S4

Chain CL

30S ribosomal protein S12