J5_6C5L_013
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6C5L|1|DA|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6C5L_013 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0866
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6C5L|1|DA|C|584
6C5L|1|DA|G|585
6C5L|1|DA|A|586
6C5L|1|DA|C|587
6C5L|1|DA|U|588
6C5L|1|DA|C|589
*
6C5L|1|DA|G|668
6C5L|1|DA|G|669
6C5L|1|DA|A|670
6C5L|1|DA|C|671
*
6C5L|1|DA|G|809
6C5L|1|DA|U|810
6C5L|1|DA|U|811
6C5L|1|DA|C|812
*
6C5L|1|DA|G|1195
6C5L|1|DA|C|1196
*
6C5L|1|DA|G|1250
6C5L|1|DA|C|1251
6C5L|1|DA|G|1252
6C5L|1|DA|A|1253
6C5L|1|DA|A|1254
6C5L|1|DA|U|1255
6C5L|1|DA|G|1256
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D8
- 50S ribosomal protein L35
- Chain DF
- 50S ribosomal protein L4
- Chain DP
- 50S ribosomal protein L15
- Chain DU
- 50S ribosomal protein L20
- Chain DV
- 50S ribosomal protein L21
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