J5_6CAE_005

3D structure

PDB id

6CAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

6CAE|1|1A|G|1789, 6CAE|1|1A|G|1794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6CAE_005 not in the Motif Atlas

Homologous match to J5_9DFE_005

Geometric discrepancy: 0.0454

The information below is about J5_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6CAE|1|1A|G|1721
6CAE|1|1A|C|1722
6CAE|1|1A|A|1723
6CAE|1|1A|A|1724
6CAE|1|1A|G|1725
6CAE|1|1A|U|1726
6CAE|1|1A|U|1727
6CAE|1|1A|G|1728
6CAE|1|1A|G|1729
*
6CAE|1|1A|U|1753
6CAE|1|1A|G|1754
*
6CAE|1|1A|C|1782
6CAE|1|1A|C|1783
*
6CAE|1|1A|G|1787
6CAE|1|1A|U|1788
6CAE|1|1A|G|1789
6CAE|1|1A|A|1790
6CAE|1|1A|A|1791
6CAE|1|1A|C|1792
6CAE|1|1A|A|1793
6CAE|1|1A|G|1794
6CAE|1|1A|G|1795
*
6CAE|1|1A|C|2010
6CAE|1|1A|G|2011
6CAE|1|1A|C|2012

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1O

50S ribosomal protein L14

Chain 1T

50S ribosomal protein L19

Chain 1a

Small subunit ribosomal RNA; SSU rRNA

Chain B

NOSO-95179 antibiotic