J5_6CAO_002

3D structure

PDB id

6CAO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosomal decoding complex at ambient temperature

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

6CAO|1|A|A|109, 6CAO|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6CAO_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.061

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6CAO|1|A|C|58
6CAO|1|A|A|59
6CAO|1|A|A|60
6CAO|1|A|G|61
*
6CAO|1|A|C|106
6CAO|1|A|G|107
6CAO|1|A|G|108
6CAO|1|A|A|109
6CAO|1|A|C|110
6CAO|1|A|G|111
6CAO|1|A|G|112
6CAO|1|A|G|113
*
6CAO|1|A|C|314
6CAO|1|A|A|315
6CAO|1|A|G|316
*
6CAO|1|A|C|337
6CAO|1|A|A|338
6CAO|1|A|C|339
*
6CAO|1|A|G|350
6CAO|1|A|G|351
6CAO|1|A|C|352
6CAO|1|A|A|353
6CAO|1|A|G|354

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20