3D structure

PDB id
6CAP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CAAG*CGGACGGG*CAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
6CAP|1|A|A|109, 6CAP|1|A|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6CAP_002 not in the Motif Atlas
Homologous match to J5_4LFB_002
Geometric discrepancy: 0.0585
The information below is about J5_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

6CAP|1|A|C|58
6CAP|1|A|A|59
6CAP|1|A|A|60
6CAP|1|A|G|61
*
6CAP|1|A|C|106
6CAP|1|A|G|107
6CAP|1|A|G|108
6CAP|1|A|A|109
6CAP|1|A|C|110
6CAP|1|A|G|111
6CAP|1|A|G|112
6CAP|1|A|G|113
*
6CAP|1|A|C|314
6CAP|1|A|A|315
6CAP|1|A|G|316
*
6CAP|1|A|C|337
6CAP|1|A|A|338
6CAP|1|A|C|339
*
6CAP|1|A|G|350
6CAP|1|A|G|351
6CAP|1|A|C|352
6CAP|1|A|A|353
6CAP|1|A|G|354

Current chains

Chain A
16S Ribosomal RNA rRNA

Nearby chains

Chain P
30S ribosomal protein S16
Chain T
30S ribosomal protein S20

Coloring options:


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