J5_6CAS_002

3D structure

PDB id

6CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MS

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

6CAS|1|A|A|109, 6CAS|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6CAS_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.063

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6CAS|1|A|C|58
6CAS|1|A|A|59
6CAS|1|A|A|60
6CAS|1|A|G|61
*
6CAS|1|A|C|106
6CAS|1|A|G|107
6CAS|1|A|G|108
6CAS|1|A|A|109
6CAS|1|A|C|110
6CAS|1|A|G|111
6CAS|1|A|G|112
6CAS|1|A|G|113
*
6CAS|1|A|C|314
6CAS|1|A|A|315
6CAS|1|A|G|316
*
6CAS|1|A|C|337
6CAS|1|A|A|338
6CAS|1|A|C|339
*
6CAS|1|A|G|350
6CAS|1|A|G|351
6CAS|1|A|C|352
6CAS|1|A|A|353
6CAS|1|A|G|354

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20