J5_6CFJ_001

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6CFJ|1|1A|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6CFJ_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0562

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6CFJ|1|1A|C|46
6CFJ|1|1A|G|47
6CFJ|1|1A|A|48
6CFJ|1|1A|U|49
6CFJ|1|1A|G|50
6CFJ|1|1A|A|51
6CFJ|1|1A|A|52
6CFJ|1|1A|G|53
*
6CFJ|1|1A|C|114
6CFJ|1|1A|G|115
6CFJ|1|1A|A|116
6CFJ|1|1A|A|117
6CFJ|1|1A|U|118
6CFJ|1|1A|G|119
*
6CFJ|1|1A|C|128
6CFJ|1|1A|G|129
*
6CFJ|1|1A|C|148
6CFJ|1|1A|A|149
6CFJ|1|1A|C|150
*
6CFJ|1|1A|G|165
6CFJ|1|1A|G|166
6CFJ|1|1A|G|167

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23