J5_6CFJ_004
3D structure
- PDB id
- 6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6CFJ|1|1A|U|1301
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6CFJ_004 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0551
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6CFJ|1|1A|C|607
6CFJ|1|1A|G|608
6CFJ|1|1A|A|609
6CFJ|1|1A|C|610
6CFJ|1|1A|U|611
6CFJ|1|1A|C|612
*
6CFJ|1|1A|G|715
6CFJ|1|1A|G|716
6CFJ|1|1A|A|717
6CFJ|1|1A|C|718
*
6CFJ|1|1A|G|856
6CFJ|1|1A|U|857
6CFJ|1|1A|U|858
6CFJ|1|1A|C|859
*
6CFJ|1|1A|G|1240
6CFJ|1|1A|C|1241
*
6CFJ|1|1A|G|1296
6CFJ|1|1A|C|1297
6CFJ|1|1A|G|1298
6CFJ|1|1A|A|1299
6CFJ|1|1A|A|1300
6CFJ|1|1A|U|1301
6CFJ|1|1A|G|1302
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 18
- 50S ribosomal protein L35
- Chain 1F
- 50S ribosomal protein L4
- Chain 1P
- 50S ribosomal protein L15
- Chain 1U
- 50S ribosomal protein L20
- Chain 1V
- 50S ribosomal protein L21
Coloring options: