3D structure

PDB id
6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GCAAGUUGG*UG*CC*GUGAACAGG*CGC
Length
25 nucleotides
Bulged bases
6CFJ|1|1A|G|1789, 6CFJ|1|1A|G|1794
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6CFJ_005 not in the Motif Atlas
Homologous match to J5_9DFE_005
Geometric discrepancy: 0.063
The information below is about J5_9DFE_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_99177.1
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
10

Unit IDs

6CFJ|1|1A|G|1721
6CFJ|1|1A|C|1722
6CFJ|1|1A|A|1723
6CFJ|1|1A|A|1724
6CFJ|1|1A|G|1725
6CFJ|1|1A|U|1726
6CFJ|1|1A|U|1727
6CFJ|1|1A|G|1728
6CFJ|1|1A|G|1729
*
6CFJ|1|1A|U|1753
6CFJ|1|1A|G|1754
*
6CFJ|1|1A|C|1782
6CFJ|1|1A|C|1783
*
6CFJ|1|1A|G|1787
6CFJ|1|1A|U|1788
6CFJ|1|1A|G|1789
6CFJ|1|1A|A|1790
6CFJ|1|1A|A|1791
6CFJ|1|1A|C|1792
6CFJ|1|1A|A|1793
6CFJ|1|1A|G|1794
6CFJ|1|1A|G|1795
*
6CFJ|1|1A|C|2010
6CFJ|1|1A|G|2011
6CFJ|1|1A|C|2012

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1E
50S ribosomal protein L3
Chain 1O
50S ribosomal protein L14
Chain 1T
50S ribosomal protein L19
Chain 1a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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