J5_6CFK_010

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6CFK|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6CFK_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0541

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6CFK|1|2A|C|47
6CFK|1|2A|G|48
6CFK|1|2A|A|49
6CFK|1|2A|U|50
6CFK|1|2A|G|51
6CFK|1|2A|A|52
6CFK|1|2A|A|53
6CFK|1|2A|G|54
*
6CFK|1|2A|C|116
6CFK|1|2A|G|117
6CFK|1|2A|A|118
6CFK|1|2A|A|119
6CFK|1|2A|U|120
6CFK|1|2A|G|121
*
6CFK|1|2A|C|130
6CFK|1|2A|G|131
*
6CFK|1|2A|C|148
6CFK|1|2A|A|149
6CFK|1|2A|C|150
*
6CFK|1|2A|G|176
6CFK|1|2A|G|177
6CFK|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23