J5_6CFL_004

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGACUC*GGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

6CFL|1|1A|U|1301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6CFL_004 not in the Motif Atlas

Homologous match to J5_9DFE_004

Geometric discrepancy: 0.0485

The information below is about J5_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6CFL|1|1A|C|607
6CFL|1|1A|G|608
6CFL|1|1A|A|609
6CFL|1|1A|C|610
6CFL|1|1A|U|611
6CFL|1|1A|C|612
*
6CFL|1|1A|G|715
6CFL|1|1A|G|716
6CFL|1|1A|A|717
6CFL|1|1A|C|718
*
6CFL|1|1A|G|856
6CFL|1|1A|U|857
6CFL|1|1A|U|858
6CFL|1|1A|C|859
*
6CFL|1|1A|G|1240
6CFL|1|1A|C|1241
*
6CFL|1|1A|G|1296
6CFL|1|1A|C|1297
6CFL|1|1A|G|1298
6CFL|1|1A|A|1299
6CFL|1|1A|A|1300
6CFL|1|1A|U|1301
6CFL|1|1A|G|1302

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 18

50S ribosomal protein L35

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15

Chain 1U

50S Ribosomal Protein L20

Chain 1V

50S ribosomal protein L21