J5_6CFL_018

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6CFL_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0738

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6CFL|1|2a|C|36
6CFL|1|2a|U|37
6CFL|1|2a|G|38
6CFL|1|2a|G|39
*
6CFL|1|2a|C|403
6CFL|1|2a|U|404
6CFL|1|2a|U|405
6CFL|1|2a|G|406
*
6CFL|1|2a|C|436
6CFL|1|2a|U|437
6CFL|1|2a|G|438
6CFL|1|2a|A|439
6CFL|1|2a|A|441
6CFL|1|2a|C|442
*
6CFL|1|2a|G|492
6CFL|1|2a|G|493
6CFL|1|2a|U|494
6CFL|1|2a|A|495
6CFL|1|2a|A|496
6CFL|1|2a|U|498
6CFL|1|2a|A|499
6CFL|1|2a|G|500
*
6CFL|1|2a|C|545
6CFL|1|2a|G|546
6CFL|1|2a|A|547
6CFL|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12