J5_6CZR_006

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

UUUA*UUUG*CG*CG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

6CZR|1|1A|U|2097, 6CZR|1|1A|G|2439, 6CZR|1|1A|G|2440, 6CZR|1|1A|A|2441, 6CZR|1|1A|U|2442, 6CZR|1|1A|A|2445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6CZR_006 not in the Motif Atlas

Homologous match to J5_9DFE_007

Geometric discrepancy: 0.0801

The information below is about J5_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6CZR|1|1A|U|2095
6CZR|1|1A|U|2096
6CZR|1|1A|U|2097
6CZR|1|1A|A|2098
*
6CZR|1|1A|U|2254
6CZR|1|1A|U|2255
6CZR|1|1A|U|2256
6CZR|1|1A|G|2257
*
6CZR|1|1A|C|2269
6CZR|1|1A|G|2270
*
6CZR|1|1A|C|2292
6CZR|1|1A|G|2293
*
6CZR|1|1A|C|2438
6CZR|1|1A|G|2439
6CZR|1|1A|G|2440
6CZR|1|1A|A|2441
6CZR|1|1A|U|2442
6CZR|1|1A|A|2443
6CZR|1|1A|A|2444
6CZR|1|1A|A|2445
6CZR|1|1A|A|2446

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 11

50S ribosomal protein L28

Chain 16

50S ribosomal protein L33

Chain 18

50S ribosomal protein L35

Chain 1D

50S ribosomal protein L2

Chain 1P

50S ribosomal protein L15

Chain 1Z

50S ribosomal protein L25